ggplot_gd

Plot genetic diversity layer produced by window_gd or krig_gd

Generate continuous maps of genetic diversity using moving windows with options for rarefaction, interpolation, and masking as described in Bishop et al. (2023) <doi:10.1111/2041-210X.14090>.

Anusha Bishop

wingen

Continuous Mapping of Genetic Diversity

Anne Chambers

Ian Wang

ggplot_gd function

<dl><dt>x</dt>
<dd>output from window_gd or krig_gd (RasterStack where first layer is genetic diversity)</dd>
<dt>bkg</dt>
<dd>optional raster or sf polygon</dd>
<dt>index</dt>
<dd>index of raster layers to plot (defaults to plotting all of the layers except the one called "sample_count", if more than one layer is provided)</dd>
<dt>col</dt>
<dd>color palette to use for plotting (defaults to <a href="https://sjmgarnier.github.io/viridisLite/reference/viridis.html">magma</a> palette)</dd></dl>

Arguments

Plot moving window map of genetic diversity — ggplot_gd

<dl>

<dt>x</dt>
<dd>output from window_gd or krig_gd (RasterStack where first layer is genetic diversity)</dd>


<dt>bkg</dt>
<dd>optional raster or sf polygon</dd>


<dt>index</dt>
<dd>index of raster layers to plot (defaults to plotting all of the layers except the one called "sample_count", if more than one layer is provided)</dd>


<dt>col</dt>
<dd>color palette to use for plotting (defaults to <a href='https://sjmgarnier.github.io/viridisLite/reference/viridis.html'>magma</a> palette)</dd>

</dl>

ggplot_gd: Plot moving window map of genetic diversity

Description

Usage

Value

Arguments

Examples