wolf_samples

Metadata of selected genetic samples of wolves collected between 2015 and 2021,
in the scope of Slovenian National Wolf Monitoring

datasets

Analyzing pedigree data of wild
populations. While primarily designed to process outputs from the
'COLONY' (Jones & Wang (2010) <doi:10.1111/j.1755-0998.2009.02787.x>)
pedigree reconstruction software, it can also accommodate
data from other sources. By linking reconstructed pedigrees with
genetic sample metadata, 'wpeR' produces spatial and temporal
visualizations as well as tabular summaries that support
interpretation of family structures and dynamics. The main goal of the
package is to provide a solution for the analysis of
complex wild pedigree data and to help the user to gain insights
into genetic relationships within wild animal populations.

Gregor Simcic

wpeR

Streamlined Analysis of Wild Pedigree Data

Tomaz Skrbinsek

wolf_samples function

A data frame with 407 rows and 7 columns:<dl>
<dt>Sample</dt>
<dd>Sample unique identifier code</dd><dt>Date</dt>
<dd>Date of sample collection (format: <code>YYYY-MM-DD</code>)</dd><dt>AnimalRef</dt>
<dd>Identification string for particular animal</dd><dt>GeneticSex</dt>
<dd>Sex of animal to which the sample belong (format: <code>M</code> = male, <code>F</code> = female)</dd><dt>lat</dt>
<dd>latitude (N-S) of the sample (CRS: WGS84; EPSG: 4326)</dd><dt>lng</dt>
<dd>longitude (W-E) of the sample (CRS: WGS84; EPSG: 4326)</dd><dt>SType</dt>
<dd>Type of the sample. (<code>Direct Saliva, Scat, Urine, Saliva, Tissue, Decomposing Tissue, Blood</code>)</dd>
</dl>

Format

Wolf monitoring genetic samples metadata — wolf_samples

A data frame with 407 rows and 7 columns:<dl>
<dt>Sample</dt>
<dd>Sample unique identifier code</dd>

<dt>Date</dt>
<dd>Date of sample collection (format: <code>YYYY-MM-DD</code>)</dd>

<dt>AnimalRef</dt>
<dd>Identification string for particular animal</dd>

<dt>GeneticSex</dt>
<dd>Sex of animal to which the sample belong (format: <code>M</code> = male, <code>F</code> = female)</dd>

<dt>lat</dt>
<dd>latitude (N-S) of the sample (CRS: WGS84; EPSG: 4326)</dd>

<dt>lng</dt>
<dd>longitude (W-E) of the sample (CRS: WGS84; EPSG: 4326)</dd>

<dt>SType</dt>
<dd>Type of the sample. (<code>Direct Saliva, Scat, Urine, Saliva, Tissue, Decomposing Tissue, Blood</code>)</dd>


</dl>

wolf_samples: Wolf monitoring genetic samples metadata

Description

Usage

Arguments

Format