# wrGraph v1.1.0

Monthly downloads

## Graphics in the Context of Analyzing High-Throughput Data

Additional options for making graphics in the context of analyzing high-throughput data are available here.
This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots,
automatic checking for optimal location of legends in plots, small histograms to insert as legends,
histograms re-transforming axis labels to linear when plotting log2-transformed data,
a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats,
principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples,
generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>,
staggered count plots and generation of mouse-over interactive html pages.

## Functions in wrGraph

Name | Description | |

MAplotW | MA-plot (differential intensity versus average intensity) | |

convertPlotCoordPix | Convert points of plot to coordinates in pixels | |

checkForLegLoc | Find best place on plot for placing legend | |

addBagPlot | Add bagplot to existing plot | |

cumFrqPlot | Cumulative (or sorted) frequency plot (takes columns of 'dat' as separate series) | |

VolcanoPlotW | Volcano-plot (Statistical Test Outcome versus Relative Change) | |

legendHist | Add histogram to existing plot | |

histW | Histogram (version by WR) | |

mouseOverHtmlFile | Create mouse-over interactive html-pages (with links) | |

imageW | Display numeric content of matrix as image | |

partitionPlot | Make matrix for layout to partition plotting area | |

staggerdCountsPlot | Staggered Chart for Ploting Counts to Multiple Leveles of the Threshold used | |

plotBy2Groups | Separate and plot data by 2 groups | |

vioplotW | Violin-plots version W | |

plotLinReg | Plot linear regression and confidence interval of regression | |

plotPCAw | PCA plot with bag-plot to highlight groups | |

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## Vignettes of wrGraph

Name | ||

wrGraphVignette1.Rmd | ||

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## Last month downloads

## Details

License | GPL-3 |

Encoding | UTF-8 |

LazyData | true |

RoxygenNote | 7.1.1 |

VignetteBuilder | knitr |

NeedsCompilation | no |

Packaged | 2020-11-21 16:24:11 UTC; wraff |

Repository | CRAN |

Date/Publication | 2020-11-21 16:50:02 UTC |

suggests | dplyr , factoextra , FactoMineR , knitr , limma , rmarkdown , sm |

imports | graphics , grDevices , RColorBrewer , stats , wrMisc |

depends | R (>= 3.1.0) |

Contributors |

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