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wtest (version 3.2)

The W-Test for Genetic Interactions Testing

Description

Perform the calculation of W-test, diagnostic checking, calculate minor allele frequency (MAF) and odds ratio.

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Version

Install

install.packages('wtest')

Monthly Downloads

148

Version

3.2

License

GPL-2

Maintainer

Rui Sun

Last Published

September 3rd, 2019

Functions in wtest (3.2)

hf.snps.meth

Parameter Estimation for W-test Probability Distribution in Gene-methylation Data
wtest.snps.meth

W-test for Gene-methylation Interaction Analysis
wtest

W-test
wtest.high

W-test for High Order Interaction Analysis
w.qqplot

W P-values Diagnosis by Q-Q Plot
w.diagnosis

W-test Probability Distribution Diagnostic Plot
odds.ratio

Odds Ratio
phenotype2

Simulated Phenotype of the genotype-methylation Data
phenotype1

Phenotype of the diabetes.geno Data
CpG.pos

Position of CpG Sites for the methylation Data
methylation.recode

Recode Methylation Data
hf

Patameter Estimation for W-test Probability Distribution
maf

Minor Allele Frequency
diabetes.geno

Genotype Data of Candidate Diabetes Genes
genotype

Example Genotype Data
SNP.pos

Pseudo Position of SNPs for the genotype Data
methylation

Example Methylation Data