xQTLbiolinks (version 1.6.2)

dbsnpQueryRange: retrieve snps from dbSNP using coordinate.

Description

retrieve snps from dbSNP using coordinate.

Usage

dbsnpQueryRange(
  chrom = "",
  startPos = -1,
  endPos = -1,
  genomeBuild = "GRCh38/hg38",
  track = "snp151Common"
)

Value

A data.table object.

Arguments

chrom

(character) name of chromesome, including chr1-chr22, chrX, chrY.

startPos

A positive integer.

endPos

A positive integer.

genomeBuild

"GRCh38/hg38" or "GRCh38/hg19". Default: "GRCh38/hg38".

track

"snp151Common", "snp150Common" or "snp147Common". Default: "snp151Common".