xQTLdownload_hqtl

Download summary statistics data of H3K4me1 and H3K27ac histone QTL (hQTL) using a specified location

Enables users-customized data retrieval, processing, analysis, and data visualization of molecular quantitative trait locus and gene expression data from public resources through the application programming interface <https://gtexportal.org/home/api-docs/index.html> of 'GTEx' and <http://www.ebi.ac.uk/eqtl/api> of 'eQTL cagalogue'.

Ruofan Ding

xQTLbiolinks

An R Package for Integrative Analysis of Quantitative Trait
Locus Data of 'xQTL'

Xudong Zou

Yangmei Qin

Gao Wang

Lei Li

xQTLdownload_hqtl function

<dl><dt>phenotype_id</dt>
<dd>phenotype_id that formatted with genome location, like: 9-99773935-99776816, can be obtained using <code>xQTLdownload_hqtlmeta</code></dd>
<dt>histone_type</dt>
<dd>(string) One of the histone types: "H3K27AC" or "H3K4ME1".</dd>
<dt>cell_type</dt>
<dd>(string) One of the cell types: "monocyte", "neutrophil" or "T cell".</dd>
<dt>hqtlmeta</dt>
<dd>A data.table object obtained via <code>xQTLdownload_hqtlmeta</code>.</dd></dl>

Arguments

Download summary statistics data of H3K4me1 and H3K27ac histone QTL (hQTL) using a specified location — xQTLdownload_hqtl

<dl>

<dt>phenotype_id</dt>
<dd>phenotype_id that formatted with genome location, like: 9-99773935-99776816, can be obtained using <code>xQTLdownload_hqtlmeta</code></dd>


<dt>histone_type</dt>
<dd>(string) One of the histone types: "H3K27AC" or "H3K4ME1".</dd>


<dt>cell_type</dt>
<dd>(string) One of the cell types: "monocyte", "neutrophil" or "T cell".</dd>


<dt>hqtlmeta</dt>
<dd>A data.table object obtained via <code>xQTLdownload_hqtlmeta</code>.</dd>

</dl>

xQTLdownload_hqtl: Download summary statistics data of H3K4me1 and H3K27ac histone QTL (hQTL) using a specified location

Description

Usage

Value

Arguments