xQTLdownload_mQTL

Download summary statistics data of DNA methylation QTL (mQTL) using CpG ID

Enables users-customized data retrieval, processing, analysis, and data visualization of molecular quantitative trait locus and gene expression data from public resources through the application programming interface <https://gtexportal.org/home/api-docs/index.html> of 'GTEx' and <http://www.ebi.ac.uk/eqtl/api> of 'eQTL cagalogue'.

Ruofan Ding

xQTLbiolinks

An R Package for Integrative Analysis of Quantitative Trait
Locus Data of 'xQTL'

Xudong Zou

Yangmei Qin

Gao Wang

Lei Li

xQTLdownload_mQTL function

<dl><dt>cpg_id</dt>
<dd>phenotype_id like: cg00000236, can be obtained using <code>xQTLdownload_mqtlmeta</code></dd>
<dt>tissue_name</dt>
<dd>(String) One of the tissues: BreastMammaryTissue, ColonTransverse, KidneyCortex, Lung, MuscleSkeletal, Ovary, Prostate, Testis and WholeBlood</dd>
<dt>mQTL_meta</dt>
<dd>meata data of the mQTL that can be accessed by <code>xQTLdownload_mqtlmeta</code></dd></dl>

Arguments

Download summary statistics data of DNA methylation QTL (mQTL) using CpG ID — xQTLdownload_mQTL

<dl>

<dt>cpg_id</dt>
<dd>phenotype_id like: cg00000236, can be obtained using <code>xQTLdownload_mqtlmeta</code></dd>


<dt>tissue_name</dt>
<dd>(String) One of the tissues: BreastMammaryTissue, ColonTransverse, KidneyCortex, Lung, MuscleSkeletal, Ovary, Prostate, Testis and WholeBlood</dd>


<dt>mQTL_meta</dt>
<dd>meata data of the mQTL that can be accessed by <code>xQTLdownload_mqtlmeta</code></dd>

</dl>

xQTLdownload_mQTL: Download summary statistics data of DNA methylation QTL (mQTL) using CpG ID

Description

Usage

Value

Arguments