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xQTLbiolinks (version 1.6.2)

xQTLquery_sampleByTissue: Query details of samples by tissue name

Description

Query details of samples by tissue name

Usage

xQTLquery_sampleByTissue(
  tissueSiteDetail = "Liver",
  dataType = "RNASEQ",
  recordPerChunk = 200,
  pathologyNotesCategories = FALSE
)

Value

returen a data.table object of samples' information

Arguments

tissueSiteDetail

(character) details of tissues in GTEx can be listed using tissueSiteDetailGTExv8 or tissueSiteDetailGTExv7

dataType

A character string. Options: "RNASEQ" (default), "WGS", "WES", "OMNI".

recordPerChunk

(integer) number of records fetched per request (default: 200).

pathologyNotesCategories

Default: pathologyNotes info is ignored.

Examples

Run this code
sampleInfo <- xQTLquery_sampleByTissue("Brain - Amygdala" )
sampleInfo <- xQTLquery_sampleByTissue(tissueSiteDetail="Liver", pathologyNotesCategories=TRUE)

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