xQTLquery_tissue

Information includes tissue IDs, number of RNA-Seq samples, number of RNA-Seq samples with genotype, number of expressed genes, number of eGenes. Also includes tissueSiteDetail ID, name, abbreviation, uberon ID, and standard tissue colors. TissueSiteDetails are grouped by TissueSites. By default, this service reports from the latest GTEx release.

Enables users-customized data retrieval, processing, analysis, and data visualization of molecular quantitative trait locus and gene expression data from public resources through the application programming interface <https://gtexportal.org/home/api-docs/index.html> of 'GTEx' and <http://www.ebi.ac.uk/eqtl/api> of 'eQTL cagalogue'.

Ruofan Ding

xQTLbiolinks

An R Package for Integrative Analysis of Quantitative Trait
Locus Data of 'xQTL'

Xudong Zou

Yangmei Qin

Gao Wang

Lei Li

xQTLquery_tissue function

<dl><dt>tissueName</dt>
<dd>Tissue name, tissue ID or tissue site name. Default return all tissues' information. Can be choonse from <code>tissueSiteDetailGTExv8</code> or <code>tissueSiteDetailGTExv7</code></dd></dl>

Arguments

Query details for a specified tissue — xQTLquery_tissue

<dl>

<dt>tissueName</dt>
<dd>Tissue name, tissue ID or tissue site name. Default return all tissues' information. Can be choonse from <code>tissueSiteDetailGTExv8</code> or <code>tissueSiteDetailGTExv7</code></dd>

</dl>

xQTLquery_tissue: Query details for a specified tissue

Description

Usage

Value

Arguments

Examples