xQTLvisual_anno

Visualize enrichment of variants derived from <code>xQTLanno_genomic</code>

Enables users-customized data retrieval, processing, analysis, and data visualization of molecular quantitative trait locus and gene expression data from public resources through the application programming interface <https://gtexportal.org/home/api-docs/index.html> of 'GTEx' and <http://www.ebi.ac.uk/eqtl/api> of 'eQTL cagalogue'.

Ruofan Ding

xQTLbiolinks

An R Package for Integrative Analysis of Quantitative Trait
Locus Data of 'xQTL'

Xudong Zou

Yangmei Qin

Gao Wang

Lei Li

xQTLvisual_anno function

<dl><dt>snpHits</dt>
<dd>A data.table object from result of xQTLanno_genomic</dd>
<dt>pValueBy</dt>
<dd>Cut step of pvlaue. Defaults: 5</dd>
<dt>annoType</dt>
<dd>"enrichment" or "overlapping"</dd></dl>

Arguments

Visualize enrichment of variants derived from xQTLanno_genomic — xQTLvisual_anno

<dl>

<dt>snpHits</dt>
<dd>A data.table object from result of xQTLanno_genomic</dd>


<dt>pValueBy</dt>
<dd>Cut step of pvlaue. Defaults: 5</dd>


<dt>annoType</dt>
<dd>"enrichment" or "overlapping"</dd>

</dl>

xQTLvisual_anno: Visualize enrichment of variants derived from `xQTLanno_genomic`

Description

Usage

Value

Arguments