levelplot,xcmsRaw-method

levelplot,xcmsSet-method

Whether the intensity should be log transformed.

The color ramp that should be used for encoding of
    the intensity.

col.regions

wheter the original (<code>rt="raw"</code>) or the corrected
    (<code>rt="corrected"</code>) retention times should be used.


  Create an image of the raw (profile) data m/z against retention
  time, with the intensity color coded.


hplot

levelplot-methods

Framework for processing and visualization of
chromatographically separated and single-spectra mass spectral data. Imports from
AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for
high-throughput, untargeted analyte profiling.

Steffen Neumann

xcms

LC/MS and GC/MS Data Analysis

levelplot-methods function

<dl>
<dt>x = "xcmsRaw"</dt><dd>
  <code>
    levelplot(x, log=TRUE, col.regions=colorRampPalette(brewer.pal(9,
    "YlOrRd"))(256), ...)
  </code>
</dd> <dt>x = "xcmsSet"</dt><dd>
  <code>
    levelplot(x, log=TRUE, col.regions=colorRampPalette(brewer.pal(9,
    "YlOrRd"))(256), rt="raw", ...)
  </code>
</dd> </dl>

levelplot-methods: Plot log intensity image of a xcmsRaw object

Description

Arguments

Methods

See Also