sourceDir

path

trace

recursive

Run source across the entire set of specified files in a given directory.

~kwd1

~kwd2

R scripts for plotting and assessing XHMM whole-exome-sequencing-based CNV calls. XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally). This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.

Menachem Fromer

xhmmScripts

XHMM R scripts

sourceDir function

sourceDir: Run source across the entire set of specified files in a given directory.

Description

Usage

Arguments

Examples