xhmmScripts-package

xhmmScripts

Examine and plot XHMM whole-exome-sequencing-based CNV
 calls. XHMM (eXome Hidden Markov Model) is a C++ software package
 (http://atgu.mgh.harvard.edu/xhmm) written to call copy number
 variation (CNV) from next-generation sequencing projects, where exome
 capture was used (or targeted sequencing, more generally). This R package enables the user to visualize both the PCA normalization
 performed by XHMM and the CNVs it has called.

R scripts for plotting and assessing XHMM whole-exome-sequencing-based CNV calls. XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally). This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.

xhmmScripts-package: Examine and plot XHMM whole-exome-sequencing-based CNV calls

Description

Arguments

Details

References