xpose.plot.default
function. Most of the
arguments take their default values from xpose.data object but this
can be overridden by supplying them as argument to xpose.plot.default
.xpose.panel.default(x, y,object,
subscripts,
groups = object@Prefs@Xvardef$id,
grp.col = NULL,
iplot = NULL,
inclZeroWRES = FALSE,
onlyfirst = FALSE,
samp = NULL,
xvarnam = NULL,
yvarnam = NULL,
###############################
## Prediction interval settings
###############################
PI = NULL,
PI.subset=NULL,
PI.bin.table=NULL,
PI.real=NULL, # can be NULL/TRUE
PI.mirror=NULL,
PI.ci = NULL,
PPI = NULL,
PI.mean = FALSE, # Should the mean be plotted in the VPCs
PI.delta.mean = FALSE, # Should the delta.mean be plotted in the VPCs
PI.limits= c(0.025, 0.975),#object@Prefs@Graph.prefs$PI.limits, PI.arcol = "lightgreen",#object@Prefs@Graph.prefs$PI.arcol,
PI.up.lty = 2,#object@Prefs@Graph.prefs$PI.up.lty,
PI.up.type = "l",#object@Prefs@Graph.prefs$PI.up.type,
PI.up.col = "black",#object@Prefs@Graph.prefs$PI.up.col,
PI.up.lwd = 2,#object@Prefs@Graph.prefs$PI.up.lwd,
PI.down.lty = 2,#object@Prefs@Graph.prefs$PI.down.lty,
PI.down.type = "l",#object@Prefs@Graph.prefs$PI.down.type,
PI.down.col = "black",#object@Prefs@Graph.prefs$PI.down.col,
PI.down.lwd = 2,#object@Prefs@Graph.prefs$PI.down.lwd,
PI.med.lty = 1,#object@Prefs@Graph.prefs$PI.med.lty,
PI.med.type = "l",#object@Prefs@Graph.prefs$PI.med.type,
PI.med.col = "black",#object@Prefs@Graph.prefs$PI.med.col,
PI.med.lwd = 2,#object@Prefs@Graph.prefs$PI.med.lwd,
PI.mean.lty = 3,#object@Prefs@Graph.prefs$PI.med.lty,
PI.mean.type = "l",#object@Prefs@Graph.prefs$PI.med.type,
PI.mean.col = "black",#object@Prefs@Graph.prefs$PI.med.col,
PI.mean.lwd = 2,#object@Prefs@Graph.prefs$PI.med.lwd,
PI.delta.mean.lty = 3,#object@Prefs@Graph.prefs$PI.med.lty,
PI.delta.mean.type = "l",#object@Prefs@Graph.prefs$PI.med.type,
PI.delta.mean.col = "black",#object@Prefs@Graph.prefs$PI.med.col,
PI.delta.mean.lwd = 2,#object@Prefs@Graph.prefs$PI.med.lwd,
PI.real.up.lty = 2,#object@Prefs@Graph.prefs$PI.real.up.lty,
PI.real.up.type = "l",#object@Prefs@Graph.prefs$PI.real.up.type,
PI.real.up.col = "red",#object@Prefs@Graph.prefs$PI.real.up.col,
PI.real.up.lwd = 2,#object@Prefs@Graph.prefs$PI.real.up.lwd,
PI.real.down.lty = 2,#object@Prefs@Graph.prefs$PI.real.down.lty,
PI.real.down.type = "l",#object@Prefs@Graph.prefs$PI.real.down.type,
PI.real.down.col = "red",#object@Prefs@Graph.prefs$PI.real.down.col,
PI.real.down.lwd = 2,#object@Prefs@Graph.prefs$PI.real.down.lwd,
PI.real.med.lty = 1,#object@Prefs@Graph.prefs$PI.real.med.lty,
PI.real.med.type = "l",#object@Prefs@Graph.prefs$PI.real.med.type,
PI.real.med.col = "red",#object@Prefs@Graph.prefs$PI.real.med.col,
PI.real.med.lwd = 2,#object@Prefs@Graph.prefs$PI.real.med.lwd,
PI.real.mean.lty = 3,#object@Prefs@Graph.prefs$PI.real.med.lty,
PI.real.mean.type = "l",#object@Prefs@Graph.prefs$PI.real.med.type,
PI.real.mean.col = "red",#object@Prefs@Graph.prefs$PI.real.med.col,
PI.real.mean.lwd = 2,#object@Prefs@Graph.prefs$PI.real.med.lwd,
PI.real.delta.mean.lty = 3,#object@Prefs@Graph.prefs$PI.real.med.lty,
PI.real.delta.mean.type = "l",#object@Prefs@Graph.prefs$PI.real.med.type,
PI.real.delta.mean.col = "red",#object@Prefs@Graph.prefs$PI.real.med.col,
PI.real.delta.mean.lwd = 2,#object@Prefs@Graph.prefs$PI.real.med.lwd,
PI.mirror.up.lty = 2,#object@Prefs@Graph.prefs$PI.mirror.up.lty,
PI.mirror.up.type = "l",#object@Prefs@Graph.prefs$PI.mirror.up.type,
PI.mirror.up.col = "darkgreen",#object@Prefs@Graph.prefs$PI.mirror.up.col,
PI.mirror.up.lwd = 1,#object@Prefs@Graph.prefs$PI.mirror.up.lwd,
PI.mirror.down.lty = 2,#object@Prefs@Graph.prefs$PI.mirror.down.lty,
PI.mirror.down.type = "l",#object@Prefs@Graph.prefs$PI.mirror.down.type,
PI.mirror.down.col = "darkgreen",#object@Prefs@Graph.prefs$PI.mirror.down.col,
PI.mirror.down.lwd = 1,#object@Prefs@Graph.prefs$PI.mirror.down.lwd,
PI.mirror.med.lty = 1,#object@Prefs@Graph.prefs$PI.mirror.med.lty,
PI.mirror.med.type = "l",#object@Prefs@Graph.prefs$PI.mirror.med.type,
PI.mirror.med.col = "darkgreen",#object@Prefs@Graph.prefs$PI.mirror.med.col,
PI.mirror.med.lwd = 1,#object@Prefs@Graph.prefs$PI.mirror.med.lwd,
PI.mirror.mean.lty = 3,#object@Prefs@Graph.prefs$PI.mirror.med.lty,
PI.mirror.mean.type = "l",#object@Prefs@Graph.prefs$PI.mirror.med.type,
PI.mirror.mean.col = "darkgreen",#object@Prefs@Graph.prefs$PI.mirror.med.col,
PI.mirror.mean.lwd = 1,#object@Prefs@Graph.prefs$PI.mirror.med.lwd,
PI.mirror.delta.mean.lty = 3,#object@Prefs@Graph.prefs$PI.mirror.med.lty,
PI.mirror.delta.mean.type = "l",#object@Prefs@Graph.prefs$PI.mirror.med.type,
PI.mirror.delta.mean.col = "darkgreen",
PI.mirror.delta.mean.lwd = 1,#object@Prefs@Graph.prefs$PI.mirror.med.lwd,
PI.ci.up.arcol = "blue",
PI.ci.up.lty = 3,#object@Prefs@Graph.prefs$PIuplty,
PI.ci.up.type = "l",#object@Prefs@Graph.prefs$PIuptyp,
PI.ci.up.col = "darkorange",#object@Prefs@Graph.prefs$PI.up.col,
PI.ci.up.lwd = 2,#object@Prefs@Graph.prefs$PI.up.lwd,
PI.ci.down.arcol = "blue",
PI.ci.down.lty = 3,#object@Prefs@Graph.prefs$PIdolty,
PI.ci.down.type = "l",#object@Prefs@Graph.prefs$PIdotyp,
PI.ci.down.col = "darkorange",#object@Prefs@Graph.prefs$PI.down.col,
PI.ci.down.lwd = 2,#object@Prefs@Graph.prefs$PI.down.lwd,
PI.ci.med.arcol = "blue",
PI.ci.med.lty = 4,#object@Prefs@Graph.prefs$PImelty,
PI.ci.med.type = "l",#object@Prefs@Graph.prefs$PImetyp,
PI.ci.med.col = "darkorange",#object@Prefs@Graph.prefs$PI.med.col,
PI.ci.med.lwd = 2,#object@Prefs@Graph.prefs$PI.med.lwd,
PI.ci.mean.arcol = "purple",
PI.ci.mean.lty = 4,#object@Prefs@Graph.prefs$PImelty,
PI.ci.mean.type = "l",#object@Prefs@Graph.prefs$PImetyp,
PI.ci.mean.col = "darkorange",#object@Prefs@Graph.prefs$PI.med.col,
PI.ci.mean.lwd = 2,#object@Prefs@Graph.prefs$PI.med.lwd,
PI.ci.delta.mean.arcol = "purple",
PI.ci.delta.mean.lty = 4,#object@Prefs@Graph.prefs$PImelty,
PI.ci.delta.mean.type = "l",#object@Prefs@Graph.prefs$PImetyp,
PI.ci.delta.mean.col = "darkorange",#object@Prefs@Graph.prefs$PI.med.col,
PI.ci.delta.mean.lwd = 2,#object@Prefs@Graph.prefs$PI.med.lwd,
PI.ci.area.smooth=FALSE,
###############################
## end of PI settings
###############################
## Basic plot characteristics
type = object@Prefs@Graph.prefs$type,
col = object@Prefs@Graph.prefs$col,
pch = object@Prefs@Graph.prefs$pch,
cex = object@Prefs@Graph.prefs$cex,
lty = object@Prefs@Graph.prefs$lty,
lwd = object@Prefs@Graph.prefs$lwd,
fill = object@Prefs@Graph.prefs$fill,
## Text label setting
ids = NULL,
idsmode=object@Prefs@Graph.prefs$idsmode,
idsext =object@Prefs@Graph.prefs$idsext,
idscex= object@Prefs@Graph.prefs$idscex,
idsdir= object@Prefs@Graph.prefs$idsdir,
## abline settings
abline= object@Prefs@Graph.prefs$abline,
abllwd= object@Prefs@Graph.prefs$abllwd,
abllty= object@Prefs@Graph.prefs$abllty,
ablcol= object@Prefs@Graph.prefs$ablcol,
smooth= object@Prefs@Graph.prefs$smooth,
smlwd = object@Prefs@Graph.prefs$smlwd,
smlty = object@Prefs@Graph.prefs$smlty,
smcol = object@Prefs@Graph.prefs$smcol,
smspan= object@Prefs@Graph.prefs$smspan,
smdegr= object@Prefs@Graph.prefs$smdegr,
smooth.for.groups=NULL,
lmline= object@Prefs@Graph.prefs$lmline,
lmlwd = object@Prefs@Graph.prefs$lmlwd ,
lmlty = object@Prefs@Graph.prefs$lmlty ,
lmcol = object@Prefs@Graph.prefs$lmcol ,
suline = object@Prefs@Graph.prefs$suline,
sulwd = object@Prefs@Graph.prefs$sulwd ,
sulty = object@Prefs@Graph.prefs$sulty ,
sucol = object@Prefs@Graph.prefs$sucol ,
suspan = object@Prefs@Graph.prefs$suspan,
sudegr = object@Prefs@Graph.prefs$sudegr,
## Layout parameters
grid = object@Prefs@Graph.prefs$grid,
logy = FALSE,
logx = FALSE,
## Force x variables to be continuous
force.x.continuous = FALSE,
## Categorcal x-variable
bwhoriz = object@Prefs@Graph.prefs$bwhoriz,
bwratio = object@Prefs@Graph.prefs$bwratio,
bwvarwid = object@Prefs@Graph.prefs$bwvarwid,
bwdotpch = object@Prefs@Graph.prefs$bwdotpch,
bwdotcol = object@Prefs@Graph.prefs$bwdotcol,
bwdotcex = object@Prefs@Graph.prefs$bwdotcex,
bwreccol = object@Prefs@Graph.prefs$bwreccol,
bwrecfill= object@Prefs@Graph.prefs$bwrecfill,
bwreclty = object@Prefs@Graph.prefs$bwreclty,
bwreclwd = object@Prefs@Graph.prefs$bwreclwd,
bwumbcol = object@Prefs@Graph.prefs$bwumbcol,
bwumblty = object@Prefs@Graph.prefs$bwumblty,
bwumblwd = object@Prefs@Graph.prefs$bwumblwd,
bwoutcol = object@Prefs@Graph.prefs$bwoutcol,
bwoutcex = object@Prefs@Graph.prefs$bwoutcex,
bwoutpch = object@Prefs@Graph.prefs$bwoutpch,
autocorr=FALSE,
## vline settings
vline= NULL,#object@Prefs@Graph.prefs$abline,
vllwd= 3,#object@Prefs@Graph.prefs$abllwd,
vllty= 2,#object@Prefs@Graph.prefs$abllty,
vlcol= "grey",#object@Prefs@Graph.prefs$ablcol,
## hline settings
hline= NULL,#object@Prefs@Graph.prefs$abline,
hllwd= 3,#object@Prefs@Graph.prefs$abllwd,
hllty= 1,#object@Prefs@Graph.prefs$abllty,
hlcol= "grey",#object@Prefs@Graph.prefs$ablcol,
# ind.plots/group panels with single point per panel/group
pch.ip.sp=pch,
cex.ip.sp=cex,
...)
xyplot
)xpose.data-class
) specifying which of the
simulated data sets to extract from SData.colours()
. The default is blue (col=4).points
. The default is an open circle.NULL
means that only extreme points are
labelled. Non-NULL
means all data points are labelled. (See
link{xpose.plot.default}
)panel.abline
function. No abline is drawn if NULL
.xyplot
. NULL
~ FALSE. (y~x
)NULL
value indicates that no superposed line
should be added to the graph. If TRUE
then a smooth of the data will
be superimposed.panel.loess
.panel.loess
.NULL
value indicates that no superposed line
should be added to the graph. If non-NULL
then this should be
the vector (the same length as y) of data points to be used for the smoothed
superposed line.panel.loess
.panel.loess
.panel.bwplot
.panel.bwplot
.panel.bwplot
panel.bwplot
.panel.bwplot
.trellis.par.get
and "box.rectangle".trellis.par.get
and "box.rectangle".trellis.par.get
and "box.rectangle".trellis.par.get
and "box.rectangle".trellis.par.get
and "box.umbrella".trellis.par.get
and "box.umbrella".trellis.par.get
and "box.umbrella".trellis.par.get
and "box.symbol".trellis.par.get
and "box.symtrellis.par.get
and "boSData
and added to the
display. NULL
means no prediction interval.read.npc.vpc.results
NULL
, TRUE
or
AN.INTEGER.VALUE
.
TRUE
takes the first mirror from PI.bin.table
and
"both", "area" or "lines"
This
can be thought of as a prediction interval about the
PI.real
or a confidence interval abosetup.PPI
.c(0.025, 0.975)
. These limits should
be found in the
PI
areaPI.ci
.PI.ci
.PI.ci
.PI.ci
.PI.ci
.PI.ci
be
smoothed to match the "lines" argument? Allowed values are
TRUE/FALSE
. The "area" is set by
default to show
the bins used in the PI.ci
computation. By smoothing,
inTRUE/FALSE
.xpose.data-class
, Cross-references above.