CallTreeSet-class: Class CallTreeSet
Description
This class provides the link to the ROOT call file and
the ROOT trees contained therein. It extends class ProcesSet.Objects from the Class
Objects are created using functions mas5.call or dabg.call, respectively.Slots
calltype:- Object of class
"character" representing the call type,
i.e. ‘mas5’ or ‘dabg’. detcall:- Object of class
"data.frame". The data.frame can contain
the detection calls stored in ROOT call trees. scheme:- Object of class
"SchemeTreeSet" providing access to
ROOT scheme file. data:- Object of class
"data.frame". The data.frame can contain
the data (i.e. p-values) stored in ROOT call trees. params:- Object of class
"list" representing relevant parameters. setname:- Object of class
"character" representing the name to the
ROOT file subdirectoy where the ROOT call trees are stored,
usually ‘CallTreeSet’. settype:- Object of class
"character" describing the type of treeset
stored in setname, usually ‘preprocess’. rootfile:- Object of class
"character" representing the name
of the ROOT call file, including full path. filedir:- Object of class
"character" describing the full path to
the system directory where rootfile is stored. numtrees:- Object of class
"numeric" representing the number of
ROOT trees stored in subdirectoy setname. treenames:- Object of class
"list" representing the names of the
ROOT trees stored in subdirectoy setname.
Extends
Class "ProcesSet", directly.
Class "TreeSet", by class "ProcesSet", distance 2.Methods
- attachCall
signature(object = "CallTreeSet"): exports detection call data from
ROOT call file and and saves as data.frame detcall.- attachPVal
signature(object = "CallTreeSet"): exports call p-values from
ROOT call file and and saves as data.frame data.- callplot
signature(x = "CallTreeSet"): creates a barplot of percent present
and absent calls.- presCall
signature(object = "CallTreeSet"): extracts the detection call data.frame.- presCall<-
signature(object = "CallTreeSet", value = "data.frame"): replaces the detection call data.frame.- pvalData
signature(object = "CallTreeSet"): extracts the detection p-value data.frame.- pvalData<-
signature(object = "CallTreeSet", value = "data.frame"): replaces the detection p-value data.frame.- removeCall
signature(object = "CallTreeSet"): replaces data.frame detcall
with an empty data.frame of dim(0,0).- removePVal
signature(object = "CallTreeSet"): replaces data.frame data
with an empty data.frame of dim(0,0).- validCall
signature(object = "CallTreeSet"): extracts a subset of columns
from data.frame detcall.- validPVal
signature(object = "CallTreeSet"): extracts a subset of columns
from data.frame data.
See Also
related classes DataTreeSet, ExprTreeSet.