attachData-methods

attachData

removeData-methods

removeData

Object of class <code>"ProcesSet"</code>.

object

treename

varlist

outfile

Attach/remove data from trees to/from <code><a rd-options="" href="/link/ProcesSet?package=xps&version=1.32.0" data-mini-rdoc="xps::ProcesSet">ProcesSet</a></code>.Usage<code>attachData(object, treenames = character(0), varlist = character(0), outfile = "data.txt")</code><code>removeData(object)</code>

methods

The package handles pre-processing, normalization, filtering
and analysis of Affymetrix GeneChip expression arrays, including exon
arrays (Exon 1.0 ST: core, extended, full probesets), gene arrays (Gene 1.0 ST)
and plate arrays on computers with 1 GB RAM only. It imports Affymetrix
.CDF, .CLF, .PGF and .CEL as well as annotation files, and computes e.g. RMA,
MAS5, FARMS, DFW, FIRMA, tRMA, MAS5-calls, DABG-calls, I/NI-calls. It is an R wrapper to
XPS (eXpression Profiling System), which is based on ROOT, an object-oriented
framework developed at CERN. Thus, the prior installation of ROOT is a prerequisite
for the usage of this package, however, no knowledge of ROOT is required.
ROOT is licensed under LGPL and can be downloaded from http://root.cern.ch.

Christian Stratowa

Processing and Analysis of Affymetrix Oligonucleotide Arrays
including Exon Arrays, Whole Genome Arrays and Plate Arrays

attachData-methods function

Attach/remove data from trees to/from <code><a rd-options='' href='ProcesSet'>ProcesSet</a></code>.

Usage

<code>attachData(object, treenames = character(0), varlist = character(0), outfile = "data.txt")</code>

<code>removeData(object)</code>

attachData-methods: Attach/Remove Data

Description

Arguments

Value

Details

See Also