plot_xpm_3d

creates 3d visualization of xpm data with scatter plot.

Provides tools for reading, parsing and visualizing simulation data stored in 'xvg'/'xpm' file
formats (commonly generated by 'GROMACS' molecular dynamics software). Streamlines post-processing
and analysis of molecular dynamics ('MD') simulation outputs, enabling efficient exploration of
molecular stability and conformational changes. Supports import of trajectory metrics ('RMSD',
energy, temperature) and creation of publication-ready visualizations through integration with
'ggplot2'.

BeiHao Li

Read, Parse and Visualize 'XVG'/'XPM' Files from Molecular
Dynamics

plot_xpm_3d function

<dl><dt>xpm_data</dt>
<dd>a xpm object (from <code>read_xpm()</code>) or list containing parsed objects.</dd>
<dt>reversescale</dt>
<dd>whether to reverse the color scale; default is FALSE</dd>
<dt>point_size</dt>
<dd>the size of the points in the scatter plot; default is 2</dd></dl>

Arguments

generate 3d scatter plot from xpm data — plot_xpm_3d

<dl>

<dt>xpm_data</dt>
<dd>a xpm object (from <code>read_xpm()</code>) or list containing parsed objects.</dd>


<dt>reversescale</dt>
<dd>whether to reverse the color scale; default is FALSE</dd>


<dt>point_size</dt>
<dd>the size of the points in the scatter plot; default is 2</dd>

</dl>

plot_xpm_3d: generate 3d scatter plot from xpm data

Description

Usage

Value

Arguments

Examples