yCrypticRNAs (version 0.99.2)

as.annotationsSet: Convert a data.table into a geneAnnotation object.

Description

Create a geneAnnotation object containing the informations on chromosomes, start and end positions, strand, score and name of genes.

Usage

as.annotationsSet(data)

Arguments

data

A data.table with 6 columns corresponding to the genes' chromosome, start posittion, end position, gene name, gene score and gene strand.

Value

An object of class geneAnnotation with the following components:

chromosome

Gene chromosome.

start

Gene transcription start site.

end

Gene transcription termination site.

name

Gene name.

score

Gene score.

strand

Gene strand.

Examples

data(annotations)
as.annotationsSet(annotations)