is_clade

Test if a lineage belongs to a clade

Provides functions to manage taxonomy when lineages are
described with strings and ranks separated with special patterns like
"|*__" or ";*__".

Antoine Bichat

yatah

Yet Another TAxonomy Handler

is_clade function

<dl><dt>lineage</dt>
<dd>string. Vector of lineages.</dd>
<dt>clade</dt>
<dd>string.</dd>
<dt>rank</dt>
<dd>string. One of <code>c("kingdom", "phylum", "class",
"order", "family", "genus", "species", "strain")</code> with partial matching.</dd></dl>

Arguments

Test if a lineage belongs to a clade — is_clade

<dl>

<dt>lineage</dt>
<dd>string. Vector of lineages.</dd>


<dt>clade</dt>
<dd>string.</dd>


<dt>rank</dt>
<dd>string. One of <code>c("kingdom", "phylum", "class",
"order", "family", "genus", "species", "strain")</code> with partial matching.</dd>

</dl>

is_clade: Test if a lineage belongs to a clade

Description

Usage

Value

Arguments

Details

Examples