trim_rank

Trim lineages until a specified rank

Provides functions to manage taxonomy when lineages are
described with strings and ranks separated with special patterns like
"|*__" or ";*__".

Antoine Bichat

yatah

Yet Another TAxonomy Handler

trim_rank function

<dl><dt>lineage</dt>
<dd>string. Vector of lineages.</dd>
<dt>rank</dt>
<dd>string. One of <code>c("kingdom", "phylum", "class",
"order", "family", "genus", "species", "strain")</code> with partial matching.</dd>
<dt>same</dt>
<dd>logical. Does the lineage have the same depth? Default to <code>TRUE</code>.</dd></dl>

Arguments

Trim lineages until a specified rank — trim_rank

<dl>

<dt>lineage</dt>
<dd>string. Vector of lineages.</dd>


<dt>rank</dt>
<dd>string. One of <code>c("kingdom", "phylum", "class",
"order", "family", "genus", "species", "strain")</code> with partial matching.</dd>


<dt>same</dt>
<dd>logical. Does the lineage have the same depth? Default to <code>TRUE</code>.</dd>

</dl>

trim_rank: Trim lineages until a specified rank

Description

Usage

Value

Arguments

Details

Examples