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ypssc (version 1.1.0)

Yeast-Proteome Secondary-Structure Calculator

Description

An extension for 'NetSurfP-2.0' (Klausen et al. (2019) ) which is specifically designed to analyze the results of bottom-up-proteomics that is primarily analyzed with 'MaxQuant' (Cox, J., Mann, M. (2008) ). This tool is designed to process a large number of yeast peptides that produced as a results of whole yeast cell-proteome digestion and provide a coherent picture of secondary structure of proteins.

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Version

Install

install.packages('ypssc')

Monthly Downloads

177

Version

1.1.0

License

GPL (>= 3)

Maintainer

Shashank Kumbhare

Last Published

November 27th, 2021

Functions in ypssc (1.1.0)

findAlpha

Alpha Helix Calculator
findSecondary

Secondary Structure Calculator
findChain

Chain Calculator
ypssc-package

ypssc: Yeast-Proteome Secondary-Structure Calculator
findBeta

Beta Sheet Calculator