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zalpha (version 0.3.0)

Run a Suite of Selection Statistics

Description

A suite of statistics for identifying areas of the genome under selective pressure. See Jacobs, Sluckin and Kivisild (2016) .

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Version

Install

install.packages('zalpha')

Monthly Downloads

198

Version

0.3.0

License

MIT + file LICENSE

Maintainer

Clare Horscroft

Last Published

November 27th, 2021

Functions in zalpha (0.3.0)

Zalpha

Runs the Zalpha function
Zalpha_rsq_over_expected

Runs the Zalpha function on the r-squared values over the expected r-squared values for the region
Zalpha_expected

Runs the Zalpha function on the expected r-squared values for the region
LR

Runs the LR function
Zalpha_log_rsq_over_expected

Runs the Zalpha function on the log of the r-squared values over the expected r-squared values for the region
Zalpha_all

Runs all the statistics in the zalpha package
L_plus_R

Runs the L_plus_R function
LDprofile

Dataset containing an example LD profile
Zalpha_BetaCDF

Runs the Zalpha function using a cumulative beta distribution function on the r-squared values for the region
Zalpha_Zscore

Runs the Zalpha function using the Z score of the r-squared values for the region
Zbeta

Runs the Zbeta function
Zbeta_BetaCDF

Runs the Zbeta function using a cumulative beta distribution function on the r-squared values for the region
snps

Dataset containing details on simulated SNPs
create_LDprofile

Creates an LD profile
Zbeta_rsq_over_expected

Runs the Zbeta function on the r-squared values over the expected r-squared values for the region
Zbeta_log_rsq_over_expected

Runs the Zbeta function on the log of the r-squared values over the expected r-squared values for the region
Zbeta_expected

Runs the Zbeta function on the expected r-squared values for the region
Zbeta_Zscore

Runs the Zbeta function using the Z score of the r-squared values for the region