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zoon (version 0.6.5)

Reproducible, Accessible & Shareable Species Distribution Modelling

Description

Reproducible and remixable species distribution modelling. The package reads user submitted modules from an online repository, runs full species distribution modelling workflows and returns output that is fully reproducible. For examples and detailed discussion refer to: N.Golding et al. (2017) 'The zoon r package for reproducible and shareable species distribution modelling'. Methods in Ecology and Evolution. . The package 'SDMTools' is used for testing and, though this package is archived, you can access it here if needed, .

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Version

Install

install.packages('zoon')

Monthly Downloads

13

Version

0.6.5

License

BSD_3_clause + file LICENSE

Issues

80

Pull Requests

1

Stars

61

Forks

13

Maintainer

Tom August

Last Published

February 28th, 2020

Functions in zoon (0.6.5)

FrescaloBias

Example bias raster for plants in England
BuildModule

BuildModule
ChangeWorkflow

Change a workflow and rerun.
FindExtent

Determine the Extent of Interest
Replicate

Replicate a module multiple times
ModuleHelp

ModuleHelp
CombineRasters

Combine rasters
TransformCRS

Change the CRS of occurrence data
RunModels

RunModels
RerunWorkflow

Rerun a workflow object.
Occurrence

Accessor functions for getting module outputs from a workflow object
plot.zoonWorkflow

Plot a schematic illustration of a zoon workflow structure.
cbindZoon

cbindZoon
GetPackage

Helper to install (if needed) and load a package
workflow

Run a full workflow.
GetModuleList

GetModuleList
ZoonFigshare

ZoonFigshare
ZoonModuleParse

Parse a module file to read roxygen tags
print.zoonCitation

A function to print zoonCitation
ZoonModel

ZoonModel
UKAirRas

UK Air temperature raster layer.
LoadModule

A function to load a module function from url or disk.
ModuleArguments

ModuleArguments
zoon

Zoon: A package for comparing multiple SDM models, good model diagnostics and better reproducibility
subsetColumnsZoon

subsetColumnsZoon
ZoonPredict

ZoonPredict
print.zoonWorkflow

A function to print a zoonWorkflow object
summary.zoonWorkflow

A function to summarize the output of a zoon workflow
ZoonCitation

ZoonCitation
GetMaxEnt

Get MaxEnt
CWBZim

Presence/absence of the coffee white stem borer in Zimbabwe 2003
Chain

Chain modules together
ExtractAndCombData

ExtractAndCombData
AplumbeusOcc

UK occurrence data for Anopheles plumbeus as taken from GBIF