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Function runClipper [graphite v1.18.0]
keywords
clipper
title
Run a topological analysis on an expression dataset using clipper.
description
clipper is a package for topological gene set analysis. It implements a two-step empirical approach based on the exploitation of graph decomposition into a junction tree to reconstruct the most relevant signal path. In the first step clipper selects significant pathways according to statistical tests on the means and the concentration matrices of the graphs derived from pathway topologies. Then, it "clips" the whole pathway identifying the signal paths having the greatest association with a specific phenotype.
Function runClipperMulti [graphite v1.18.0]
keywords
clipper
title
Run a topological analysis on an expression dataset using clipper.
description
This function is deprecated and will be removed in a future release. You can use runClipper instead.