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Function getBioMartData [snplist v0.18.1]
keywords
database
title
getBioMartData
description
A function leveraging the biomaRt package to retrieve gene chromosome and start and end positions from Ensembl.
Function setSNPTable [snplist v0.18.1]
keywords
database
title
setSNPTable
description
Takes a file or data.frame object with columns 'chr','pos', and 'rsid', and creates an SQLite table of the information. Returns a count of the number of SNPs in the table.
Function setGeneTable [snplist v0.18.1]
keywords
database
title
setGeneTable
description
Takes a data.frame object with columns 'gene','chr','start', and 'end', and creates an SQLite table of the information. Returns a count of the number of genes in the table.
Function makeGeneSet [snplist v0.18.1]
keywords
database
title
makeGeneSet
description
This function uses existing SQLite tables (from setGeneTable and setSNPTable) to make SNP sets. The SNP Set for each gene is the collection of SNPs located either between the start and end locations of the gene, or within a specified neighborhood around the gene. The SNP Sets are stored in the SQLite database, and returned as a list object.
Function sqrlSource [SQRL v0.7.4]
keywords
database
title
Define New Data Sources
description
Defines (registers) new data sources and creates the interface functions for communicating with them. For DSNs, this process occurs automatically when SQRL is loaded, thereby making the manual use of this function unnecessary for those sources. The function can also redefine or delete (deregister) existing sources.
Function sqrlOff [SQRL v0.7.4]
keywords
database
title
Close Connections and Deactivate the Package
description
Closes all connections, detaches the interface environment (SQRL:Face) from the search path, and unloads the SQRL namespace. No further communication with any data source will be possible through SQRL (until it is reloaded).
Function gmConnectServer [gmDatabase v0.5.0]
keywords
database
title
Geometallurgy Database connection
description
A geometallurgy database is a database on a relational database server. It can handle very general and recursive information for the transparent access to whole projects from a statistical analysis software.
Function gmSQLValues [gmDatabase v0.5.0]
keywords
database
title
Format vector in parenthesis and SQL quote it
description
Formats values for use in SQL statements
Function createS [filehash v2.4-2]
keywords
database
title
Create/Initialize Stack
description
Create or initialize a stack data structure using filehash databases
Function dbLoad [filehash v2.4-2]
keywords
database
title
Load database into environment
description
Load entire database into an environment