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Function fibtelereg [genpathmox v0.2]
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datasets
title
Fibtelereg
description
Fibtelereg dataset
Function fibtele [genpathmox v0.2]
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datasets
title
Fibtele
description
Fibtele
Function S [QUIC v2012.02]
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datasets
title
ER dataset
description
Empirical covariance matrix derived from the ER dataset. The original dimension 7027 was reduced to 692 by thresholding.
Function haz_fl_velo [hazus v0.1]
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datasets
title
Velocity-depth-damage functions from HAZUS, specific to flood
description
These functions are specified in HAZUS as empirical equations and indicate whether or not the structure will collapse under a given combination of flood velocity and flood depth. The empirical equations have the form specified below, where the coefficients and exponents are dependent on the velocity and depth thresholds for a given structure type $$coef1 * V ^ {expo1} + coef2 * V + coef3$$
Function tobit.list [superdiag v1.1]
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datasets
title
tobit.list
description
A Tobit Model was estimated with MCMC techniques. The estimation was performed with five parallel chains of 50,000 iterations each and the first 40,000 iterations were discarded.
Function example_compounds [eiR v1.12.2]
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datasets
title
Example Compounds
description
122 compounds in SDF format, stored as a list. Each element of the list is one line of text. This is just used in some unit tests.
Function mgQuery [metagenomeFeatures v1.2.2]
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datasets
title
Example ShortRead 16S experiment dataset
description
A dataset containing the top OTU centers from a 16S marker gene survey. Specifically, the OTU centers came from 'Healthy and moderate to severe diarrhea 16S expression data' - bioconductor dataset 'msd16s'.
Function msd16s_query_df [metagenomeFeatures v1.2.2]
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datasets
title
Example Query Data Frame
description
Example query_df for use in generating a metagenomeAnnotation-class object using the annotate MgDb-class method. The dataset contains the msd16s OTU ids and Greengenes database version 13.5 ids. Specifically, the OTU centers came from 'Healthy and moderate to severe diarrhea 16S expression data' - bioconductor dataset 'msd16s'.
Function GeneExpExample1000 [DEGseq v1.26.0]
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datasets
title
GeneExpExample1000
description
GeneExpExample1000.txt includes the first 1000 lines in SupplementaryTable2.txt which is a supplementary file for Marioni,J.C. et al. (2008) (http://genome.cshlp.org/content/18/9/1509/suppl/DC1).
Function kidneyChr21Bowtie [DEGseq v1.26.0]
keywords
datasets
title
kidneyChr21Bowtie
description
The reads uniquely mapped to human chromosome 21 obtained from the kidney sample sequenced in Run 1, Lane 1.