Function aCGH.process [aCGH v1.50.0]

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file

title

Process data in aCGH object

description

This function takes object of class aCGH, and filters clones based on their mapping information and proportion missing. It also average duplicated clones and reports quality statistic.

Function aCGH.read.Sprocs [aCGH v1.50.0]

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file

title

Create object of class "aCGH" from Sproc files

description

This function reads in two-channel Array Comparative Genomic Hybridization Sproc files, flags them for bad quality and missing data, and creates object of class aCGH.

Function readImaGeneHeader [limma v3.28.14]

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file

title

Read ImaGene Header Information

description

Read the header information from an ImaGene image analysis output file. This function is used internally by read.maimages and is not usually called directly by users.

Function HarshComp [Harshlight v1.44.0]

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file

title

a blemish detection program for microarray chips: extended and compact defects only

description

Harshlight automatically detects and masks blemishes in microarray chips of class AffyBatch

Function HarshExt [Harshlight v1.44.0]

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file

title

a blemish detection program for microarray chips: extended defects only

description

Harshlight automatically detects and masks blemishes in microarray chips of class AffyBatch

Function Harshlight [Harshlight v1.44.0]

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file

title

a blemish detection program for microarray chips: extended, diffuse, and compact defects

description

Harshlight automatically detects and masks blemishes in microarray chips of class AffyBatch

Function getCoExpGeneofLncs [LncPriCNet v1.0]

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file

title

Get Co-expressed Genes of LncRNAs

description

Get co-expressed genes of one or some lncRNAs based on the multi-omics network.

Function getDiseaseInf [LncPriCNet v1.0]

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file

title

Get All Disease Information based on phenotype id (OMIM Id) Provided by LncPriCNet Package

description

Get all disease information provided by LncPriCNet package by OMIMID. This function will provide you known disease genes and lncRNAs corresponding phenotype.

Function getTopDiseaseLncRNAs [LncPriCNet v1.0]

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file

title

Get the Disease Risk LncRNAs

description

prioritize the disease candidate lncRNAs by integrated multi-omics information.

Function ldmultinom [SpatialEpi v1.2.3]

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file

title

log multinomial Density

description

Compute log of density of multinomial