Function data_frame [simplegraph v1.0.0]

keywords

internal

title

Create a data frame, more robust than data.frame

description

It does not create factor columns. It recycles columns to match the longest column.

Function cross [remix v2.1]

keywords

internal

title

Cross x and y

description

Cross x and y

Function cross_list [remix v2.1]

keywords

internal

title

Cross variables in a list

description

Cross variables in a list

Function Deprecated [synapter v1.14.2]

keywords

internal

title

synapter Deprecated and Defunct

description

The function, class, or data object you have asked for have been deprecated or made defunct. Deprecated functions are provided for compatibility with older versions of the synapter package only, and will be defunct at the next release. Defunct functions have been removed. Deprecated: Defunct: synapterGUI; use the replacement synergise

Function cigar-utilities [AllelicImbalance v1.10.2]

keywords

internal

title

realCigarPosition

description

From a GAlignments calculate the real corresponding position for each read based on its cigar.

Function scoreRankings [OrderedList v1.44.0]

keywords

internal

title

Score the Comparison of two Rankings

description

Two rankings are accepted as input in the form of corresponding ranks in two lists. The weighted overlap score is computed efficiently without explicitly computing overlaps.

Function RSofia-internal [RSofia v1.1]

keywords

internal

title

Internal RSofia Functions

description

Internal RSofia functions

Function sfaGetHf [rSFA v1.04]

keywords

internal

title

Return a SFA function as a quadratic form.

description

sfaGetHf returns function number NR in the sfa object referenced by HDL in the form of a quadratic form q(x) = 1/2*x'*H*x + f'*x + c Of course, this only works if a quadratic expansion was used during training. The quadratic form can lie in different spaces, i.e. it can receive as input preprocessed or non-preprocessed vectors. This is specified by setting the argument WHERE. The quadratic form lies - in the preprocessed space for WHERE==0 (e.g. the whitened space if the preprocessing type is PCA) - in the PCA space (i.e. projected on the principal components but not whitened, works only if PCA was used for preprocessing) for WHERE==1 - in the input, mean-free space for WHERE==2 - in the input space for WHERE==3 In general you will need to set WHERE to 2 or 3, but working in the preprocessed spaces can often drastically improve the speed of analysis.

Function sets-internal [sets v1.0-16]

keywords

internal

title

Internal

description

Internal functions not intended for public use.

Function init1_fMM [MRIaggr v1.1.5]

keywords

internal

title

Pre-processing of the fMMalgo arguments

description

Pre-process the arguments of the fMMalgo function. For internal use.