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Function ABCoptim-package [ABCoptim v0.14.0]
keywords
package
title
An implementation of the Artificial Bee Colony (ABC) Algorithm
description
This is an implementation of Karaboga (2005) ABC optimization algorithm. It was developed upon the basic version programmed in C and distributed at the algorithm's official website (see the references).
Function arrayhelpers-package [arrayhelpers v1.0-20160527]
keywords
package
title
Package arrayhelpers
description
Little helper functions to work with arrays
Function amen-package [amen v1.3]
keywords
package
title
Additive and Multiplicative Effects Models for Networks and Relational Data
description
Analysis of network and relational data using additive and multiplicative effects (AME) models. The basic model includes regression terms, the covariance structure of the social relations model (Warner, Kenny and Stoto (1979), Wong (1982)), and multiplicative factor effects (Hoff(2009)). Four different link functions accommodate different relational data structures, including binary/network data (bin), normal relational data (nrm), ordinal relational data (ord) and data from fixed-rank nomination schemes (frn). Several of these link functions are discussed in Hoff, Fosdick, Volfovsky and Stovel (2013). Development of this software was supported in part by NICHD grant R01HD067509.
Function ChIPpeakAnno-package [ChIPpeakAnno v3.6.5]
keywords
package
title
Batch annotation of the peaks identified from either ChIP-seq or ChIP-chip experiments.
description
The package includes functions to retrieve the sequences around the peak, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features such as most conserved elements and other transcription factor binding sites leveraging biomaRt, IRanges, Biostrings, BSgenome, GO.db, hypergeometric test phyper and multtest package.
Function ChIPseeker-package [ChIPseeker v1.8.6]
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package
title
ChIP-SEQ Annotation, Visualization and Comparison
description
This package is designed for chip-seq data analysis
Function brewdata-package [brewdata v0.4]
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package
title
Package Brewdata
description
Brewdata is a package built to lookup, parse, and analyze statistics and biostatistics graduate admissions data reported in the Grad Cafe Results Search.
Function bootruin-package [bootruin v1.2-4]
keywords
package
title
A Bootstrap Test for the Probability of Ruin in the Compound Poisson Risk process
description
This package provides a bootstrap test for the probability of ruin in the classical (compound Poisson) risk process and some procedures for comparing the performance of the bootstrap test and the test using the asymptotic normal approximation.
Function db.r [db.r v0.1.3]
keywords
package
title
Explore databases interactively using the R shell
description
db.r provides a way to interactively explore databases in R. It uses the Reference classes to create Python/Ruby/Javascript-esque objects in R that dynamically load database schemas, execute queries, and manage credentials.
Function cshapes-package [cshapes v0.6]
keywords
package
title
CShapes Dataset and Utilities
description
R Package for CShapes, a GIS dataset of country boundaries (1946-2015). Includes functions for data extraction and the computation of weights matrices.
Function BSSasymp-package [BSSasymp v1.2-1]
keywords
package
title
Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates.
description
Description: Functions to compute the asymptotic covariance matrices of mixing and unmixing matrix estimates of the following blind source separation (BSS) methods: symmetric and squared symmetric FastICA, regular and adaptive deflation-based FastICA, FOBI, JADE, AMUSE and deflation-based and symmetric SOBI. Also functions to estimate these covariances based on data are available. For details, see Miettinen et al. (2015) <doi:10.1214/15-STS520>, Miettinen et al. (2016) <doi:10.1111/jtsa.12159>, Miettinen et al. (2017) <doi:10.1016/j.sigpro.2016.08.028>, Miettinen et al. (2017) <doi:10.18637/jss.v076.i02>, and references therein.