Function replaceVarsInExpression [gmDatabase v0.5.0]

keywords

utilities

title

Replace Variables in Expressions

description

Replaces the variables in expressions by something else and returns the expression.

Function extractVignettes [biocViews v1.40.1]

keywords

utilities

title

Extract pdf vignettes from local package repository

description

These functions extract pdf or HTML files from the inst/doc subdirectory of R source packages archives (.tar.gz) found in a local package repository. All pdf files found in inst/doc will be extracted. With extractHTMLDocuments, all HTML files except index.html will be extracted. Only source package archives will be processed. The extracted pdf or HTML files will be extracted under destDir and will be found in PKGNAME/inst/doc/. Prior to extraction, all pdf files in destDir/PKGNAME/inst/doc will be removed.

Function writePackageDetailHtml [biocViews v1.40.1]

keywords

utilities

title

Write HTML files for packages in a CRAN-style repository

description

This function creates package "homepages" that describe the package and provide links to download package artifacts in the repository.

Function writeRepositoryHtml [biocViews v1.40.1]

keywords

utilities

title

Write package descriptions and a repository index as HTML

description

This function generates an HTML file for each package in a repository and generates an index.html file that provides an alphabetized listing of the packages.

Function writeRFilesFromVignettes [biocViews v1.40.1]

keywords

utilities

title

Write R files from vignettes

description

Ensures that .R files from vignette code chunks are written out.

Function genReposControlFiles [biocViews v1.40.1]

keywords

utilities

title

Generate CRAN-style repository control files

description

This function generates control files for CRAN-style repositories. For each path specified in contribPaths a PACKAGES file is written. In addition, two top-level control files are created: REPOSITORY contains information about the specified contrib paths. VIEWS contains metadata for all packages in the repository including the paths to any extracted vignettes, if found. This file is useful for generating HTML views of the repository.

Function writeTopLevelView [biocViews v1.40.1]

keywords

utilities

title

Write the view for the root of a vocabulary to disk

description

Given a directory and a vocabulary represented as a graphNEL containing a DAG of terms, write the top-level term to disk as HTML. This assumes your vocabulary has a single term with no parents.

Function extractTopLevelFiles [biocViews v1.40.1]

keywords

utilities

title

Extract files from the top level of source package tarballs

description

Extracts files from source tarballs of packages.

Function extractNEWS [biocViews v1.40.1]

keywords

utilities

title

Extract NEWS files from source package tarballs

description

Extracts NEWS files from source tarballs of packages.

Function writeBiocViews [biocViews v1.40.1]

keywords

utilities

title

Write a list of BiocView objects to HTML

description

This function serializes a list of BiocView-class objects to a series of HTML files.