bikm1 (version 1.1.0)

BIKM1_LBM_Binary: BIKM1_LBM_Binary fitting procedure

Description

Produce a blockwise estimation of a contingency matrix of observations.

Usage

BIKM1_LBM_Binary(x,Gmax,Hmax,a=4,b=1,
Gstart=2,Hstart=2,init_choice='smallVBayes',userparam=NULL,
ntry=50,criterion_choice='ICL', mc.cores=1,verbose=TRUE)

Arguments

x

binary matrix of observations.

Gmax

a positive integer less than number of rows.

Hmax

a positive integer less than number of columns.The bikm1 procedure stops while the numbers of rows is higher than Gmax or the number of columns is higher than Hmax.

a

hyperparameter used in the VBayes algorithm for priors on the mixing proportions. By default, a=4.

b

hyperparameter used in the VBayes algorithm for prior on the Bernoulli parameter. By default, b=1.

Gstart

a positive integer to initialize the procedure with number of row clusters. By default, Gstart=2.

Hstart

a positive integer to initialize the procedure with number of column clusters. By default, Hstart=2.

init_choice

a character string corresponding to the chosen initialization strategy used for the procedure, which can be "random" or "smallVBayes" or "user". By default, init_choice="smallVBayes".

userparam

in the case where init_choice is "user", a list containing partitions z and w. By default userparam=NULL.

ntry

a positive integer corresponding to the number of times which is launched the small VBayes or random initialization strategy. By default ntry=100.

criterion_choice

a character string corresponding to the chosen criterion used for model selection, which can be "ICL" as for now. By default, criterion_choice="ICL".

mc.cores

a positive integer corresponding to the available number of cores for parallel computing. By default, mc.cores=1.

verbose

logical. To display each step and the result. By default verbose=TRUE.

Value

a BIKM1_LBM_Binary object including

model_max: the selected model by the procedure with free energy W, theta, conditional probabilities (s_ig, r_jh), iter, empty_cluster, and the selected partitions z and w.

criterion_choice: the chosen criterion

init_choice: the chosen init choice

criterion tab: the matrix containing the criterion values for each selected number of row and column

W_tab: the matrix containing the free energy values for each selected number of row and column

criterion_max: the maximum of the criterion values

gopt: the selected number of rows

hopt: the selected number of columns

References

Govaert and Nadif. Co-clustering, Wyley (2013).

Keribin, Brault and Celeux. Estimation and Selection for the Latent Block Model on Categorical Data, Statistics and Computing (2014).

Robert. Classification crois\'ee pour l'analyse de bases de donn\'ees de grandes dimensions de pharmacovigilance. Paris Saclay (2017).

Examples

# NOT RUN {
require(bikm1)
set.seed(42)
n=200
J=120
g=3
h=2
theta=list()
theta$pi_g=1/g *matrix(1,g,1)
theta$rho_h=1/h *matrix(1,h,1)
theta$alpha_gh=matrix(runif(6),ncol=h)
data=BinBlocRnd_LBM(n,J,theta)
res=BIKM1_LBM_Binary(data$x,3,2,Gstart=3,Hstart=2,
init_choice='user',userparam=list(z=data$xrow,v=data$xcol))

# }