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bikm1 (version 1.1.0)

Co-Clustering Adjusted Rand Index and Bikm1 Procedure for Contingency and Binary Data-Sets

Description

Co-clustering of the rows and columns of a contingency or binary matrix, or double binary matrices and model selection for the number of row and column clusters. Three models are considered: the Poisson latent block model for contingency matrix, the binary latent block model for binary matrix and a new model we develop: the multiple latent block model for double binary matrices. A new procedure named bikm1 is implemented to investigate more efficiently the grid of numbers of clusters. Then, the studied model selection criteria are the integrated completed likelihood (ICL) and the Bayesian integrated likelihood (BIC). Finally, the co-clustering adjusted Rand index (CARI) to measure agreement between co-clustering partitions is implemented. Robert Valerie, Vasseur Yann, Brault Vincent (2021) .

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Version

Install

install.packages('bikm1')

Monthly Downloads

252

Version

1.1.0

License

GPL-2

Maintainer

Valerie Robert

Last Published

July 16th, 2021

Functions in bikm1 (1.1.0)

BIKM1_LBM_Poisson-class

Class "BIKM1_LBM_Poisson"
NCE_simple

NCE_simple function for agreement between clustering partitions
NCE_LBM

NCE_LBM function for agreement between co-clustering partitions using NCE_simple
ARI

ARI function for agreement between two partitions
BinBlocICL_MLBM

BinBlocICL_MLBM function for computation of the ICL criterion in the MLBM
BIKM1_LBM_Poisson

BIKM1_LBM_Poisson fitting procedure
BIKM1_LBM_Binary-class

Class "BIKM1_LBM_Binary"
CE_simple

CE_simple function for agreement between clustering partitions
BinBlocRnd_LBM

BinBlocRnd_LBM function for binary data matrix simulation
PoissonBlocRnd

PoissonBlocRnd function for contingency data simulation
CoNMI

CoNMI function for agreement between co-clustering partitions
CE_LBM

CE_LBM function for agreement between co-clustering partitions
CE_MLBM

CE_MLBM function for agreement between co-clustering partitions in the MBLM
BIKM1_MLBM_Binary-class

Class "BIKM1_MLBM_Binary"
PoissonBlocVisuResum

PoissonBlocVisuResum function for visualization of contingency datasets
bikm1-package

bikm1 package
print,BIKM1_MLBM_Binary-method

Print method for a BIKM1_MLBM_Binary object
print,BIKM1_LBM_Poisson-method

Print method for a BIKM1_LBM_Poisson object
BinBlocVisuResum_MLBM

BinBlocVisuResum_MLBM function for visualization of double matrix datasets
BinBlocVisu_LBM

BinBlocVisu_LBM function for visualization of binary matrix datasets
plot,BIKM1_MLBM_Binary-method

Plot method for a '>BIKM1_MLBM_Binary object
PoissonBlocVisu

PoissonBlocVisu function for visualization of contingency datasets
print,BIKM1_LBM_Binary-method

Print method for a BIKM1_LBM_Binary object
BinBlocVisuResum_LBM

BinBlocVisuResum_LBM function for visualization of binary matrix data-sets
PoissonBlocBIC

PoissonBlocBIC function for the computation of the BIC criterion in the Poisson LBM
PoissonBlocICL

PoissonBlocICL function for the computation of the ICL criterion in the Poisson LBM
show,BIKM1_MLBM_Binary-method

Show method for a BIKM1_MLBM_Binary object
BinBlocRnd_MLBM

BinBlocRnd_MLBM function for binary double data matrix simulation
BIKM1_MLBM_Binary

BIKM1_MLBM_Binary fitting procedure
BinBlocICL_LBM

BinBlocICL_LBM function for computation of the ICL criterion in the Binary LBM
plot,BIKM1_LBM_Binary-method

Plot method for a '>BIKM1_LBM_Binary object
plot,BIKM1_LBM_Poisson-method

Plot method for a '>BIKM1_LBM_Poisson object
summary,BIKM1_LBM_Binary-method

Summary method for a BIKM1_LBM_Binary object
BinBlocVisu_MLBM

BinBlocVisu_MLBM function for visualization of double matrix datasets
show,BIKM1_LBM_Binary-method

Show method for a BIKM1_LBM_Binary object
CARI

CARI function for agreement between co-clustering partitions
summary,BIKM1_LBM_Poisson-method

Summary method for a BIKM1_LBM_Poisson object
MI_simple

MI_simple function for agreement between two partitions
ENMI

ENMI function for agreement between co-clustering partitions
show,BIKM1_LBM_Poisson-method

Show method for a BIKM1_LBM_Poisson object
summary,BIKM1_MLBM_Binary-method

Summary method for a BIKM1_MLBM_Binary object
BIKM1_LBM_Binary

BIKM1_LBM_Binary fitting procedure