CAGEr (version 1.14.0)

CTSScoordinates: Extracting genomic coordinates of TSSs from CAGEset object

Description

Extracts the genomic coordinates of all detected TSSs from a CAGEset object.

Usage

CTSScoordinates(object)

Arguments

object

A CAGEset object

Value

Returns a data.frame with genomic coordinates of all TSSs. pos column contains 1-based coordinate of the TSS.

See Also

CTSStagCount

CTSSnormalizedTpm

Examples

load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))

CTSS <- CTSScoordinates(exampleCAGEset)
head(CTSS)