CAGEr (version 1.14.0)

CTSStagCount: Extracting CAGE tag count for TSSs from CAGEset object

Description

Extracts the tag count for all detected TSSs in all CAGE datasets from a CAGEset object.

Usage

CTSStagCount(object)

Arguments

object

A CAGEset object

Value

Returns a data.frame with number of CAGE tags supporting each TSS (rows) in every CAGE dataset (columns).

See Also

CTSScoordinates

CTSSnormalizedTpm

Examples

load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))

tagCount <- CTSStagCount(exampleCAGEset)
head(tagCount)