stringgaussnet (version 1.1)

FilterEdges.FactorNetworks: Filter edges in FactorNetworks

Description

Function to filter on edge attribute in an FactorNetworks object.

Usage

## S3 method for class 'FactorNetworks':
FilterEdges(x, Threshold, Superior = T, AttributeFilter = "Rho",
	Absolute = T, ...)

Arguments

x

An object of class FactorNetworks

Threshold

Threshold used to filter on edge attribute

Superior

Boolean variable indicating whether values must be superior or inferior to the threshold

AttributeFilter

Character indicating on which edge attribute to filter

Absolute

Boolean indicating whether the attribute must transformed into absolute values before filtering

...

Additional parameters. Not used here

Value

• Object of class FactorNetworks with filtered edges

See Also

FactorNetworks, FactorNetworks.default, print.FactorNetworks

Examples

# data(SpADataExpression)
# data(SpADEGenes)
# data(SpASamples)
# SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# StatusFactor<-paste(SpASamples$status,SpASamples$b27,sep=".")
# names(StatusFactor)=SpASamples$chipnum

# NodesForSIMoNe<-rownames(SpADEGenes)[1:17]
# GaussianSpAData<-DEGeneExpr(t(SpADataExpression[NodesForSIMoNe,]),SpADEGenes[NodesForSIMoNe,])

# GlobalSIMoNeNetNF<-getSIMoNeNet(GaussianSpAData)
# GlobalSIMoNeNet<-FilterEdges(GlobalSIMoNeNetNF,0.4)

# StatusFactorSIMoNeNet<-FactorNetworks(GaussianSpAData,StatusFactor,"SIMoNe")
# StatusFactorSIMoNeNet<-FilterEdges(StatusFactorSIMoNeNet,0.4)