stringgaussnet
Creation of DEGenesExpr object.
FilterEdges.FactorNetworks
Filter edges in FactorNetworks
Get STRING network from gene identifiers
Filter edges on network.
Add Cytoscape mapping for SIMoNeNet
Convert stringgaussnet network into igraph
addFactorGraphsToCytoscape
Add FactorNetworks object to Cytoscape
Function to create object of class SIMoneNet
75 DE genes analysis results from LIMMA.
Samples description for SpA example data.
Generic function for objects of class DEGeneExpr.
summary.ShortPathSTRINGNet
Summary function for object of class ShortPathSTRINGNet
Print function for object of class ShortPathSTRINGNet.
Convert aliases
Filter edges in SIMoNeNet
Export WGCNANet
Function to create an object of class MultiNetworks
Function to create an object of class FactorNetworks
Add network style to Cytoscape
Function to create an object of class WGCNANet
Add network to Cytoscape
Pick SIMoNe parameters
Converts from igraph to Cytoscape object
ShortPathSTRINGNet.default
Function to create object of class ShortPathSTRINGNet
Convert to distance graph from STRINGNet
Infer SIMoNe network from expression data
Map attributes for toCytoscape()
Compare gaussian networks
Generic function to export network objects from package stringgaussnet.
Plot WGCNANet
Print function for object of class WGCNANet.
addShortPathSTRINGNetMappings
Add Cytoscape mapping for ShortPathSTRINGNet
Check Cytoscape running
Plot SIMoNeNet
Generic function for objects of class MultiNetworks
Apply style to a network in Cytoscape
Pick WGCNA parameters
Compute similarities for WGCNA
Reset Cytoscape session
Print function for object of class FactorNetworks
Add default mappings for Cytoscape styles
Add Cytoscape mapping for WGCNANet
Save Cytoscape session
Infer WGCNA network from expression data
Print function for object of class SIMoNeNet.
Get shortest paths between given nodes in STRING network.
Print function for object of class STRINGNet.
Summary function for object of class SIMoNeNet
Summary function for object of class WGCNANet
Summary function for object of class STRINGNet
Select interaction sources in STRINGNet object
Compute STRING combined scores
Find shortest pathways between selected nodes
Print function for object of class DEGeneExpr.
Plot FactorNetworks
Add default values for Cytoscape styles
Generic function for objects of class WGCNANet
Export STRINGNet
Generic function for objects of class ShortPathSTRINGNet.
Function to create an object of class STRINGNet
Merge gaussian networks edges
Export SIMoNeNet
Generic function for objects of class STRINGNet.
FilterEdges.ShortPathSTRINGNet
Filter edges in ShortPathSTRINGNet
Get gene annotations
Merge FactorNetworks edges
Print function for object of class MultiNetworks
Generic function for objects of class MultiDEGeneExpr
export.ShortPathSTRINGNet
Export ShortPathSTRINGNet
Gert maRt datasets
Data expression of the 75 DE genes identified by LIMMA in SpA sample data.
Generic function for objects of class FactorNetworks
Function to create an object of class MultiDEGeneExpr
Generic function for objects of class SIMoNeNet
Print function for object of class MultiDEGeneExpr
Apply layout to a network in Cytoscape
Add Cytoscape mapping for STRINGNet
Add MultiNetworks to Cytoscape
Compare levels of FactorNetworks