stringgaussnet (version 1.1)

FilterEdges.SIMoNeNet: Filter edges in SIMoNeNet

Description

Function to filter on theta score or spearman's statistics in a SIMoNeNet object.

Usage

## S3 method for class 'SIMoNeNet':
FilterEdges(x, Threshold, Superior = T, AttributeFilter = "Rho",
	Absolute = T, ...)

Arguments

x

Object of class SIMoNeNet

Threshold

Threshold used to filter on edge attribute

Superior

Boolean variable indicating whether values must be superior or inferior to the threshold

AttributeFilter

Character indicating on which edge attribute to filter. Can be "Rho", "P.Value" or "Theta".

Absolute

Boolean indicating whether the attribute must be transformed into absolute values before filtering

...

Additional parameters. Not used here

Value

• Object of class SIMoNeNet with filtered edges

See Also

SIMoNeNet, SIMoNeNet.default, getSIMoNeNet, print.SIMoNeNet, summary.SIMoNeNet, export.SIMoNeNet, pickSIMoNeParam

Examples

# data(SpADataExpression)
# data(SpADEGenes)
# SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# NodesForSIMoNe<-rownames(SpADEGenes)[1:17]
# GaussianSpAData<-DEGeneExpr(t(SpADataExpression[NodesForSIMoNe,]),SpADEGenes[NodesForSIMoNe,])

# pickSIMoNeParam(GaussianSpAData)

# GlobalSIMoNeNet<-getSIMoNeNet(GaussianSpAData)
# GlobalSIMoNeNet<-FilterEdges(GlobalSIMoNeNet,0.4)
# print(GlobalSIMoNeNet,5)
# summary(GlobalSIMoNeNet)
# plot(GlobalSIMoNeNet)

# export(GlobalSIMoNeNet,"GlobalSIMoNeNet",T)