Learn R Programming

isa2 (version 0.3.6)

The Iterative Signature Algorithm

Description

The ISA is a biclustering algorithm that finds modules in an input matrix. A module or bicluster is a block of the reordered input matrix.

Copy Link

Version

Install

install.packages('isa2')

Monthly Downloads

1,407

Version

0.3.6

License

CC BY-NC-SA 4.0

Issues

1

Pull Requests

0

Stars

6

Forks

5

Maintainer

Gabor Csardi

Last Published

February 21st, 2023

Functions in isa2 (0.3.6)

isa.normalize

Normalize input data for use with ISA
isa.unique

Filter out biclusters that are very similar to each other
isa.biclust

Convert ISA modules to a Biclust class, as defined by the biclust package
generate.seeds

Generate seed vectors for the Iterative Signature Algorithm
isa.in.silico

Generate in-silico input data for biclustering algorithms
isa.iterate

The Iterative Signature Algorithm
isa2-package

The isa package
isa.option

Options for the isa package
isa

Iterative Signature Algorithm
isa.sweep

Create a hierarchical structure of ISA biclusters
ppa.in.silico

Generate in-silico input data for testing the PPA algorithm
ppa

The Ping-Pong Algorithm
robustness

Robustness of ISA biclusters and PPA co-modules
ppa.unique

Filter co-modules that are very similar to each other
ppa.iterate

The Ping-Pong Algorithm
ppa.normalize

Normalize input data for use with the PPA
plotModules

Image plots of biclusters