HetLogAddCnPlm: The HetLogAddCnPlm class

Description

Package: aroma.affymetrix Class HetLogAddCnPlm Object ~~| ~~+--Model ~~~~~~~| ~~~~~~~+--UnitModel ~~~~~~~~~~~~| ~~~~~~~~~~~~+--MultiArrayUnitModel ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--ProbeLevelModel ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--RmaPlm ~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~+--HetLogAddPlm ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--HetLogAddSnpPlm ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--SnpPlm ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--CnPlm ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--HetLogAddCnPlm Directly known subclasses: public static class HetLogAddCnPlm extends CnPlm

Usage

HetLogAddCnPlm(..., combineAlleles=FALSE)

Arguments

...

Arguments passed to HetLogAddCnPlm.

combineAlleles

If FALSE, allele A and allele B are treated seperately, otherwise together.

Fields and Methods

Methods: No methods defined. Methods inherited from CnPlm: getCellIndices, getChipEffectSet, getCombineAlleles, getProbeAffinityFile, setCombineAlleles Methods inherited from SnpPlm: getCellIndices, getChipEffectSet, getMergeStrands, getProbeAffinityFile, setMergeStrands Methods inherited from HetLogAddSnpPlm: getAsteriskTags Methods inherited from HetLogAddPlm: getAsteriskTags Methods inherited from RmaPlm: getAsteriskTags, getCalculateResidualsFunction, getRlmFitFunctions Methods inherited from ProbeLevelModel: calculateResidualSet, calculateWeights, fit, getAsteriskTags, getCalculateResidualsFunction, getChipEffectSet, getProbeAffinityFile, getResidualSet, getWeightsSet Methods inherited from MultiArrayUnitModel: getListOfPriors, setListOfPriors, validate Methods inherited from UnitModel: findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction Methods inherited from Model: fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags Methods inherited from Object: asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Model

TO DO.