K1: Calculate scores for minimum moment abberations.
Description
Calculate the MMA K1, K12, and the standardized dissimilarity score (eff1).Usage
Kstat(genomat, type = 1)
K1(genomat)
K12(genomat)
eff1(n, nmark, s1)
Arguments
type
Type of dissimilarity measure desired (first or second
moment).
s1
Dissimilarity score from K1 or K12.
Value
- Score or standardized score based on selected marker list.
K1 and K12 call Kstat with type = 1 and 2,
respectively. Kstat computes the minimum moment abberation
score. eff1 computes the standardized genetic dissimilarity.
References
Jin C, Lan H, Attie AD, Churchill GA, Bulutuglo D, Yandell BS (2004) Selective phenotyping for increased efficiency in genetic mapping studies. Genetics 168: 2285-2293.