a list containing two elements: ct (the expression
estimates) and qc (quality scores)
qcThreshold1
a numeric threshold corresponding to object1$qc below which values are considered low quality.
object2
an optional second list of the same format as
object1, used to compare two methods.
qcThreshold2
a numeric threshold corresponding to object2$qc
below which values are considered low quality.
commonFeatures
if TRUE and object2 is non-NULL, only high quality non-NA features in common between both objects are used.
bins
the number of bins to divide the data into.
label1
optional label corresponding to object 1 to be used in plotting.
label2
optional label corresponding to object 2 to be used in plotting.
Value
A plot of signal detect slopes stratified by difference in pure sample
expression is produced, and a summary (median and MAD) of the signal
detect slopes in each bin is returned.