OpticalBackgroundCorrection: The OpticalBackgroundCorrection class

Description

Package: aroma.affymetrix Class OpticalBackgroundCorrection Object ~~| ~~+--AromaTransform ~~~~~~~| ~~~~~~~+--Transform ~~~~~~~~~~~~| ~~~~~~~~~~~~+--ProbeLevelTransform ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--BackgroundCorrection ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--OpticalBackgroundCorrection Directly known subclasses: public static class OpticalBackgroundCorrection extends BackgroundCorrection This class represents "optical" background adjustment.

Usage

OpticalBackgroundCorrection(..., minimum=1)

Arguments

...

Arguments passed to the constructor of ProbeLevelTransform.

minimum

The minimum signal allowed after adjustment.

Fields and Methods

Methods: rll{ process Performs background correction. } Methods inherited from BackgroundCorrection: process Methods inherited from Transform: getOutputDataSet, getOutputDataSetOLD20090509, getOutputFiles Methods inherited from AromaTransform: getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getTags, isDone, process, setTags Methods inherited from Object: asThis, getChecksum, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save