PhyDat2Morphy

An object of class <code><a rd-options="" href="/link/phyDat?package=TreeSearch&version=0.4.0" data-mini-rdoc="TreeSearch::phyDat">phyDat</a></code>.

Creates a new Morphy object with the same size and characters as the
<code>phyDat</code> object

Searches for phylogenetic trees that are optimal using a
user-defined criterion.
Handles inapplicable data using the algorithm of
Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.
Implements Profile Parsimony (Faith and Trueman, 2001)
<doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969)
<doi:10.2307/2412182>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Martin Brazeau

PhyDat2Morphy function

An object of class <code><a rd-options='' href='phyDat'>phyDat</a></code>.

PhyDat2Morphy: Initialize a Morphy Object from a `phyDat` object

Description

Usage

Arguments

Value

See Also