Usage
SSplotIndices(replist, subplots = 1:7, plot = TRUE, print = FALSE,
fleets = "all", fleetnames = "default", smooth = TRUE, add = FALSE,
datplot = FALSE, labels = c("Year", "Index", "Observed index",
"Expected index","Log index", "Log observed index",
"Log expected index", "Standardized index"), pwidth = 7, pheight = 7,
punits = "in", res = 300, ptsize = 12,
cex.main = 1, plotdir = "default", verbose = TRUE)Arguments
replist
list created by SSoutput
subplots
vector controlling which subplots to create
plot
plot to active plot device?
fleets
optional vector to subset fleets for which plots will be made
fleetnames
optional replacement for fleenames used in data file
smooth
add smoothed line to plots of observed vs. expected sample sizes
add
add to existing plot (not yet implemented)
datplot
make plot of data only?
labels
vector of labels for plots (titles and axis labels)
pwidth
width of plot written to PNG file
pheight
height of plot written to PNG file
res
resolution for PNG file
ptsize
ptsize for PNG file
cex.main
character expansion for plot titles
plotdir
directory where PNG files will be written. by default it will
be the directory where the model was run.
verbose
report progress to R GUI?