Get output from multiple Stock Synthesis models.
Estimate bias adjustment for recruitment deviates
Plot numbers-at-age related data and fits.
A function to create a list object for the output from Stock Synthesis
plot many quantities related to output from Stock Synthesis
Plot SPR quantities.
Updates r4ss files to newest versions on web.
Plot yield and surplus production.
Make plots from Rebuilder program
Plot fit to discard fraction.
Run a likelihood profile in Stock Synthesis.
Split apart bootstrap data to make input file.
Plot composition data and fits.
Plot tagging data and fits
Run a collection of simulations for Stock Synthesis.
A function for converting Stock Synthesis output to the format
used by FishGraph
Plot recruitment deviations
Plot biology related quantities.
A function to visual parameterization of double normal and
double logistic selectivity in Stock Synthesis
Plot mean weight data and fits.
Plot indices of abundance and associated quantities.
R tools for Stock Synthesis
Plot distributions of priors, posteriors, and estimates.
A function to visual parameterization of movement in Stock Synthesis
Summarize the output from multiple Stock Synthesis models.
Change parameters in the control file.
Create multi-figure plots.
Make shaded polygons with a mountain-like appearance
Plot spawner-recruit curve.
a function for drawing selecitivity curves
Plot timeseries data
Plot catch related quantities.
Make files and set up folders for simulations
Plot selectivity
function "stackpoly" by Jim Lemon from "plotrix" package
Plot points with confidence intervals.
Make a vector of colors.
function to plot many quantities related to output from Stock Synthesis
Plot of recruitment distribution among areas and seasons
Get parameter lines from Stock Synthesis control file
Create a bubble plot.
A function to create a list object for the output from Stock Synthesis
Insert a vector of recruitment deviations into the control
file.