Usage
SSplotNumbers(replist, subplots = 1:7, plot = TRUE, print = FALSE,
areas = "all", areanames = "default", areacols = "default",
pntscalar = 2.6, period = c("B","M"), add = FALSE,
labels = c("Year", "Age", "True age (yr)", "SD of observed age (yr)",
"Mean observed age (yr)", "Mean age (yr)", "mean age in the population",
"Ageing imprecision", "Numbers at age at equilibrium",
"Equilibrium age distribution",
"Sex ratio of numbers at age (males/females)", "Length",
"Mean length (cm)", "mean length (cm) in the population",
"expected numbers at age", "Beginning of year", "Middle of year",
"expected numbers at length"),
pwidth = 7, pheight = 7, punits = "in", res = 300,
ptsize = 12, cex.main = 1, plotdir = "default", verbose = TRUE)Arguments
replist
list created by SSoutput
subplots
vector controlling which subplots to create
plot
plot to active plot device?
areas
optional subset of areas to plot for spatial models
areanames
names for areas. Default is to use Area1, Area2,...
areacols
vector of colors by area
pntscalar
maximum bubble size for bubble plots; each plot scaled independently
based on this maximum size and the values plotted. Often some plots
look better with one value and others with a larger or smaller
value. Default=2.6
period
indicator of whether to make plots using numbers at age just from
the beginning ("B") or middle of the year ("M") (new option starting
with SSv3.11)
add
add to existing plot? (not yet implemented)
labels
vector of labels for plots (titles and axis labels)
pwidth
width of plot written to PNG file
pheight
height of plot written to PNG file
res
resolution for PNG file
ptsize
ptsize for PNG file
cex.main
character expansion for plot titles
plotdir
directory where PNG files will be written. by default it will
be the directory where the model was run.
verbose
report progress to R GUI?