Objects from the Class
Objects can be created by calls of the form
new("UTR3eSet", usage, PDUI, PDUI.log2, short, long, signals, testRes)Slots
usage- an GRanges object with CP sites info.
PDUI- a matrix of PDUI
PDUI.log2- log2 transformed PDUI matrix
short- a matrix of usage of short form
long- a matrix of usage of long form
signals- signals used for single sample
testRes- a matrix of test results of testUsage
Methods
- $, $<-
- Get or set the slot of UTR3eSet
- as("UTR3eSet", "ExpressionSet")
- Convert a UTR3eSet to an ExpressionSet.
- as("UTR3eSet", "GRanges")
- Convert a UTR3eSet to an GRanges.