aafGOItem-class: Class aafGOItem, a class for gene ontology id elements
Description
An abstraction for gene ontology id elements from Bioconductor
data packages. Multiple instances of this class are held by the
wrapper class aafGO
.
Objects from the Class
Objects are generally created by the aafGO
constructor.
Objects can also be created manually by calls of the form
new("aafGOItem", id, name, type)
.Slots
id
:-
Object of class
character
containing GO id
name
:-
Object of class
character
containing textual name
type
:-
Object of class
character
containing GO subtype
evid
:-
Object of class
character
containing GO evidence code
Methods
- getText
-
(aafGOItem): Returns textual representation formatted
"
id
: name
".
- getURL
-
(aafGOItem): Returns a URL to the corresponding gene ontology
entry on AmiGO.
- getHTML
-
(aafGOItem): Returns an HTML representation including the
URL link, gene ontology name, and rollover subtype.