aafGOItem-class: Class aafGOItem, a class for gene ontology id elements
Description
An abstraction for gene ontology id elements from Bioconductor
data packages. Multiple instances of this class are held by the
wrapper class aafGO.
Objects from the Class
Objects are generally created by the aafGO constructor.
Objects can also be created manually by calls of the form
new("aafGOItem", id, name, type).Slots
id:-
Object of class
character containing GO id
name:-
Object of class
character containing textual name
type:-
Object of class
character containing GO subtype
evid:-
Object of class
character containing GO evidence code
Methods
- getText
-
(aafGOItem): Returns textual representation formatted
"
id: name".
- getURL
-
(aafGOItem): Returns a URL to the corresponding gene ontology
entry on AmiGO.
- getHTML
-
(aafGOItem): Returns an HTML representation including the
URL link, gene ontology name, and rollover subtype.