aafPathway-class: Class aafPathway, a class for KEGG pathway ids
Description
An abstraction for KEGG pathway ids from Bioconductor data
packages. This class is actually extends aafList
and holds
aafPathwayItem
objects which have the actual annotation
data.
Objects from the Class
Objects are generally created by the aafPathway
constructor.
Objects can also be created manually by calls of the form
new("aafPathway", list(pathwayitems))
.Slots
.Data
:- Object of class
list
Extends
Class aafList
, from data part.Methods
- getText
-
(aafGO): Returns a comma delimeted list of the individual
aafPathwayItem
objects.
- getURL
-
(aafGO): Returns zero length character vector because this
method is not valid for this class.
- getHTML
-
(aafGO): Returns an HTML representation of each of the
individual
aafPathwayItem
objects, concatenated together.
- getTD
-
(aafGO): Returns an HTML table cell representation with the
class set to "aafPathway".
- getCSS
-
(aafGO): Returns a line of CSS which intends PathwayItem
paragraphs.