mglR (version 0.1.0)

addAei: Add allele specific expression data to list

Description

addAei returns a list with the twentieth element as dataframe with allele specific data from GTEx.

Usage

addAei(mgl, fpsource)

Arguments

mgl

List; see buildFromNames, buildFromRegion, or buildFromEnsgs

fpsource

A character string of with the filepath where the data has been downloaded

Details

This gives allele specific expression RNAsequencing data as reported by GTEx for the gene of interest. See http://www.gtexportal.org/. It pulls data based on the ENSG identifier.

See Also

Other elements: addAntisense, addCisEqtl, addDnase, addEnst, addExpression, addGo, addGrasp, addGwasCatalog, addLoc, addPtv, addPubmed, addSqtlAltrans, addSqtlSeek, addTransEqtl, missNames

Examples

## Not run: buildFromRegion(chr = 2, start = 102314000, stop = 103435000) -> myMgl
## Not run: myMgl <- addAei(myMgl, fpsource = "/Downloads")